Journal of Reproduction & Infertility

Journal of Reproduction & Infertility

A Case Report of Suspected Achondrogenesis Type 1A with Novel TRIP11 Variant: Parental Carrier Detection and Targeted Prenatal Exclusion in a Subsequent Pregnancy

Document Type : Case Report

Authors
1 Department of Anatomy, All India Institute of Medical Sciences, Odisha, India
2 Department of Obstetrics and Gynaecology, Ram Krishna Medical College Hospital and Research Centre, Madhya Pradesh, India
3 Department of Obstetrics and Gynaecology, All India Institute of Medical Sciences, Odisha, India
4 Department of Neonatology, All India Institute of Medical Sciences, Odisha, India
Abstract
Background: Achondrogenesis type 1A (ACG1A) is a rare perinatally lethal skeletal dysplasia that results from biallelic loss-of-function variants in TRIP11, which encodes the Golgi microtubule-associated protein GMAP-210. A case of clinically suspected ACG1A in an unrelated couple is described after termination at 19 weeks of gestation of a severely micromorphic fetus with cloverleaf skull, sacral agenesis, vertebral flattening, and thoracic hypoplasia. Genetic testing was not done on the affected fetus.
Case Presentation: A heterozygous 13-base-pair deletion in exon 13 of TRIP11 (Chr14:g.91999349_91999361del) was discovered in the mother during a subsequent preconception genetic evaluation using whole exome sequencing (WES). In the father, Sanger sequencing confirmed the same heterozygous variant consistent with an autosomal recessive inheritance. According to the American College of Medical Genetics and Genomics (ACMG) criteria, the frameshift deletion, which is expected to cause premature termination, was deemed likely pathogenic (PVS1, PM2, PP3) and was not present in public variant databases. Although molecular confirmation in the affected fetus was unavailable, the phenotype was highly suggestive of TRIP11-related ACG1A. While molecular confirmation in the affected fetus was not possible, the phenotype strongly suggested TRIP11-related ACG1A. In the subsequent pregnancy, targeted prenatal testing with amniocentesis showed absence of the familial variant in the fetus and the pregnancy was continued.
Conclusion: This case expands the mutational spectrum of TRIP11 and underscores the clinical utility of exome sequencing for carrier detection and recurrence prevention in lethal skeletal dysplasias. It also emphasizes the importance of clinical phenotyping integration with molecular diagnostics while recognizing the limitations that arise in the absence of fetal genotyping.
Keywords
Subjects

Introduction
Skeletal dysplasias are a heterogeneous group of more than 400 heritable disorders that affect cartilage and bone development, with an estimated prevalence of approximately 1 in 4,000 to 5,000 live births; however, lethal forms such as achondrogenesis occur at rates closer to around 1 in every 40,000 pregnancies (1). These disorders are caused due to genetic mutations that affect osteochondrogenesis, resulting in dispro-portionate short stature and limb malformations along with craniofacial anomalies, with implic-ations for neonatal survival and long-term quality of life (2). Clinical manifestations display a broad range from mild and non-lethal variants to perinatally lethal forms, with inheritance patterns of dominant, recessive or sporadic de novo mutations, each associated with different re-currence risks for families (3,4).
Achondrogenesis type 1A (ACG1A) is among the most severe lethal skeletal dysplasias, which fall under the definition of type I because of their perinatally lethal phenotype resulting from ex-treme micromelia, thoracic hypoplasia, and marked skeletal demineralization (5). Radiogra-phically, ACG1A is characterized by unossified skull base, aplastic or hypoplastic vertebrae, short ribs with flared metaphysis, and poorly ossified long bones with fractures (6). Histologically, it demonstrates disorganization of chondrocytes with sparse matrix, representing defective endochondral and intramembranous ossification (7).
The thyroid hormone receptor interactor 11 (TRIP11) gene encodes Golgi microtubule-associated protein 210 (GMAP-210), which is essential for Golgi apparatus function and, in turn, chondrogenesis and osteogenesis (3). The TRIP11 mutation spectrum correlates with phenotypic severity; null alleles (nonsense, frameshift, essential splice-site disruptions) cause lethal ACG1A, while hypomorphic variants (missense, in-frame deletions) yield milder odontochondro-dysplasia (ODCD) featuring short stature, dentinogenesis imperfecta, and metaphyseal irregularities (2). Prenatal diagnosis relies on ultrasound detection of short limbs (<3rd percentile), narrow chest, and polyhydramnios from second trimester onward, confirmed by molecular testing via amniocentesis or CVS (3). Early identification enables reproductive counseling, highlighting the 25% recurrence risk in autosomal recessive cases like ACG1A (8). 

Case Presentation
A couple presented to Perinatal Clinic at All India Institute of Medical Sciences, Bhubaneswar, Odisha, India in August 2023 with radiological images and photographs of previous abortus for preconception counselling. This study was performed after the approval was obtained from the Institutional Ethics Committee of All India Institute of Medical Sciences (AIIMS), Bhubaneswar, India. Written informed consent was obtained from the patient for publication of clinical details and images included in this report. All efforts have been made to maintain patient anonymity.
The woman was 24 years old and the husband was 29. They were married for 3 years and it was a non-consanguineous marriage. They conceived spontaneously after one year of marriage. First trimester NT scan and aneuploidy screening were not performed. The second trimester anomaly scan showed a single live fetus at 19 weeks’ gestation with cloverleaf skull, sacral agenesis, flattening of the vertebrae, narrow thorax, bilateral mild renal pelviectasis, and bones of upper and lower limb were significantly small (<5 percentile). No other fetal anomalies were identified. The overall findings were suggestive of a skeletal dysplasia (Figures 1A and 1C). A pedigree chart was constructed (Figure 1D).
The couple opted for medical termination of pregnancy in view of suspected lethal skeletal dysplasia at a local center. The patient vaginally expelled a male abortus (Figure 1E). Neither autopsy nor genetic evaluation was performed on the abortus at the time of expulsion.
Upon review of the obstetric history, available radiological imaging, and post-abortive photo-graphs, a clinical suspicion of a lethal skeletal dysplasia was established. Following pre-test counseling, whole exome sequencing (WES) was initiated for the female partner to identify potential carrier status. WES identified a heterozygous 13‑base‑pair deletion within exon 13 of the TRIP11 gene (Chr14:g.91999349_ 91999361del) (Figure 1F). To determine familial segregation, subsequent targeted Sanger sequencing of the male partner’s peripheral blood was performed, which confirmed the presence of the identical heterozygous TRIP11 mutation (Table 1). The identified TRIP11 exon 13 frameshift deletion (Chr14:g.91999349_ 91999361del) was not found in ClinVar, HGMD, OMIM, or gnomAD at the time of analysis and thus appears to represent a previously unreported variant.

Table 1. Whole exome and targeted Sanger sequencing reports of proband (mother), husband (father), and their current fetus (second pregnancy) 

Mother: whole exome sequencing (WES)

Gene* (transcript)

Location

Variant

Zygosity

Disease (OMIM)

Inheritance

Classifications

TRIP11 (-)

(ENST00000267622.8)

Exon 13

c.4771_4783del

(p.Ser1591IlefsTer15)

Heterozygous

Achondrogenesis, type IA (OMIM#200600)/ Odontochondrodysplasia 1 (OMIM#184260)

Autosomal recessive

Likely pathogenic (PVS1, PM2)

Father: Targeted Sanger sequencing

Gene name

Exon/ Intron

Variant reported in the proband

Variant detected in family member*

Clinical condition

of family member

TRIP11

Exon 13

chr14:g.91999349_91999361del; c.4771_4783del (HET);

(p.Ser1591IlefsTer15)

Present and heterozygous

Asymptomatic

Current fetus: Targeted Sanger sequencing

Gene name

Exon/ Intron

Variant reported in the

proband

Variant detected in family member*

Clinical condition

of family member

TRIP11

Exon 13

chr14:g.91999349_91999361del; c.4771_4783del (HET);

(p.Ser1591IlefsTer15)

Absent

NA

To formally evaluate the pathogenicity of this novel variant, the American College of Medical Genetics and Genomics (ACMG) guidelines were applied. The identified TRIP11 exon 13 frameshift deletion was classified as "Likely Pathogenic" according to ACMG guidelines (PVS1, PM2, PP3). The affected fetus was not genetically tested, but the clinical phenotype closely resembled achondrogenesis type 1A and both parents were heterozygous carriers which supported an autosomal recessive mode of inheritance.
The couple received detailed post-test genetic counseling after definitive molecular diagnosis. Autosomal recessive inheritance of the condition and the corresponding 25% risk of recurrence in future pregnancies were described.  Reproductive planning was discussed in terms of targeted prenatal diagnosis through chorionic villus sampling (CVS) or amniocentesis in future pregnancies.
When they presented again with the second pregnancy, the routine antenatal care was continued, with amniocentesis planned for 16 weeks’ gestation. Sanger sequencing was performed on the amniotic fluid for the reported variant. No mutations were detected in the fetus and the couple was advised to continue the pregnancy with routine antenatal care (Table 1 and figure 2). 

Discussion
Achondrogenesis type 1A (ACG1A, or Houston-Harris type) represents the severe end of the TRIP11-related skeletal dysplasia spectrum, distinguished from types IB (Parenti-Fraccaro, due to SLC26A2 mutations) and II (Langer-Saldino, due to COL2A1 mutations) by its Golgi-specific pathogenesis and characteristic radiological findings (4). At the molecular level, ACG1A results from biallelic loss-of-function variants in the TRIP11 gene on chromosome 14q32, encoding Golgi microtubule-associated protein 210 (GMAP-210) (9). The cisternal-stacking protein, GMAP-210, is essential for Golgi ribbon stability, vesicular transport, and glycosylation of cartilage-specific proteins like type II collagen and aggrecan (8). Variants of TRIP11 exhibit extraordinary pleiotropy; homozygous null mutations abolish GMAP-210 function, leading to Golgi fragmentation and accumulation of developmental proteins, thereby disrupting the proper trafficking of IFT20 (intraflagellar transport 20), a motor protein essential for primary cilia function during chondrocyte differentiation (8, 10). Chondrocytes are particularly vulnerable to defective protein secretion due to their high secretory demands during skeletal growth. Studies in TRIP11-knockout mice confirm cartilage-specific defects, with intramembranous bones spared, underscoring chondrocyte hypersensitivity to Golgi stress (11).
Phenotypic variability is dependent on variant type and zygosity. The deep intronic variant c.5457+81T >A in TRIP11 is an exon trapper, causing 90% mRNA downregulation as well as Golgi stack compaction, as seen antenatally in ACG1A fetuses presenting with hydrops and shortened ribs (9). Similarly, frameshift deletions such as c.1795_1818del in exon 13 (as noted in this case) may also result in nonsense-mediated decay, produce undetectable protein, and manifest with classic features of cloverleaf skull, sacral agenesis, and vertebral aplasia (2). Milder odontochondrodysplasia (ODCD) due to com-pound heterozygous missense/splice variants retains residual GMAP-210, permitting survival with dental and skeletal phenotypes without lethality (12).
Comparative analysis demonstrates stable hallmarks between cohorts. Molz and Spycher described thin calvaria and bowed ribs in ACG1A autopsy specimens, findings that reflect the hypoplastic thorax and micromelia evident in the present case (7). Aigner et al. highlighted hydrops and unmineralized vertebrae, with a focus on phenotypic homogeneity despite genetic heterogeneity within TRIP11 (5). Most lethal skeletal dysplasias are suspected on ultrasonography around 18–20 weeks’ gestation with severe micromelia and thoracic hypoplasia, although there is significant phenotypic overlap with thanatophoric dysplasia or hypophosphatasia, requiring molecular confirmation (13). Although WES offers high analytical sensitivity, its clinical diagnostic yield for prenatally identified skeletal dysplasias is 40–60%. Sanger sequencing is used after WES for segregation analysis, as demonstrated here to identify carrier status and inform decisions regarding amniocentesis (14).
The identification of the same novel TRIP11 frameshift variant in two apparently unrelated carrier parents raises the possibility of an unrecognized distant common ancestry or a regional founder effect, despite the absence of a reported familial relationship. In populations where endogamy is practiced, pathogenic alleles may persist within geographically or culturally defined groups without an obvious pedigree connection. Although recurrent mutational events cannot be entirely excluded, they are less likely for this frameshift variant. Further population-based studies, haplotype analysis, and screening of additional affected families will be necessary to determine whether this variant represents a founder mutation or an independently occurring rare pathogenic allele. Diagnostic delays are common, largely due to the rarity of TRIP11 variants and the phenomenon of autosomal recessivity being masked in non‑consanguineous families, which often complicates preconception counseling. This case highlights the utility of WES in evaluating suspected lethal skeletal dysplasias and guiding reproductive counseling. Identification of a novel frameshift deletion in TRIP11, predicted to result in loss of function, enabled carrier detection and targeted prenatal testing in the subsequent pregnancy. The variant is predicted to result in a premature termination codon with a high deleteriousness score (CADD PHRED >20), supporting its classification as likely pathogenic. However, in the absence of molecular testing of the affected fetus, genotype–phenotype correlation in this family remains inferential. Post-diagnosis, preimplantation genetic testing for monogenic disorders (PGT-M) and non-invasive prenatal testing (NIPT) offer future reproductive options; however, technical limitations of NIPT for recessive traits, combined with the stringent medico-legal frameworks governing prenatal diagnostics in India, firmly position targeted invasive testing as the clinical gold standard for subsequent pregnancies (15).
Currently, achondrogenesis type IA remains a perinatally lethal disorder with no disease-modifying treatment available. Management is therefore focused on accurate prenatal diagnosis, genetic counseling, and informed reproductive planning. A multidisciplinary approach involving clinical geneticists, radiologists, and maternal–fetal medicine specialists is essential to ensure timely diagnosis and appropriate counseling. In the current case, targeted molecular analysis performed after anomaly detection facilitated precise carrier diagnosis and guided subsequent prenatal testing through amniocentesis, thereby enabling prevention of recurrence in current pregnancy. 

Conclusion
Achondrogenesis type 1A, mediated by TRIP11 gene mutations, is a lethal skeletal dysplasia requiring sensitive prenatal surveillance and molecular diagnostic intervention. Ultrasound integrated with WES and targeted sequencing significantly improves reproductive counseling by identifying preconception and antenatal options to address the 25% recurrence risk. Future research into Golgi-targeted therapies may expand the spectrum beyond lethality, improving outcomes for TRIP11-related disorders. 

Acknowledgement
The authors sincerely thank the patient's family for their cooperation and consent to the publication of this case report. The authors also acknowledge the technical assistance provided by the laboratory personnel in the genetic analysis.  

Conflict of Interest
The authors declare that there is no conflict of interest.
Funding: The authors received no specific funding for this work.

1. The Fetal Medicine Foundation [Internet]. [cited 2026 Feb 26]. Available from: https://fetalmedicine.org/education/fetal-abnormalities/skeleton/achondrogenesis
2. Medina CTN, Sandoval R, Oliveira G, da Costa Silveira K, Cavalcanti DP, Pogue R. Pathogenic variants in the TRIP11 gene cause a skeletal dysplasia spectrum from odontochondrodysplasia to achondrogenesis 1A. Am J Med Genet A. 2020;182(4):681-8.
3. Vanegas S, Sua LF, López-Tenorio J, Ramírez-Montaño D, Pachajoa H. Achondrogenesis type 1A: clinical, histologic, molecular, and prenatal ultrasound diagnosis. Appl Clin Genet. 2018;11:69-73.
4. Superti-Furga A, Unger S. Nosology and classification of genetic skeletal disorders: 2006 revision. Am J Med Genet A. 2007;143A(1):1-18.
5. Aigner T, Rau T, Niederhagen M, Zaucke F, Schmitz M, Pöhls U, et al. Achondrogenesis type IA (Houston-Harris): a still-unresolved molecular phenotype. Pediatr Dev Pathol. 2007;10(4):328-34.
6. van der Harten HJ, Brons JT, Dijkstra PF, Niermeyer MF, Meijer CJ, van Giejn HP, et al. Achondrogenesis-hypochondrogenesis: the spectrum of chondrogenesis imperfecta. A radiological, ultrasonographic, and histopathologic study of 23 cases. Pediatr Pathol. 1988;8(6):571-97.
 
7. Molz G, Spycher MA. Achondrogenesis type I: light and electron-microscopic studies. Eur J Pediatr. 1980;134(1):69-74.
8. Smits P, Bolton AD, Funari V, Hong M, Boyden ED, Lu L, et al. Lethal skeletal dysplasia in mice and humans lacking the golgin GMAP-210. N Engl J Med. 2010;362(3):206-16.
9. Upadhyai P, Radhakrishnan P, Guleria VS, Kausthubham N, Nayak SS, Superti-Furga A, et al. Biallelic deep intronic variant c.5457+81T>A in TRIP11 causes loss of function and results in achondrogenesis 1A. Hum Mutat. 2021;42(8):1005-14.
10. Follit JA, San Agustin JT, Xu F, Jonassen JA, Samtani R, Lo CW, et al. The golgin GMAP210/TRIP11 anchors IFT20 to the golgi complex. PLoS Genet. 2008;4(12):e1000315.
11. Bird IM, Kim SH, Schweppe DK, Caetano-Lopes J, Robling AG, Charles JF, et al. The skeletal phenotype of achondrogenesis type 1A is caused exclusively by cartilage defects. Development. 2018;145(1):dev156588.
 
12. Yeter B, Aslanger AD, Yeşil G, Elçioğlu NH. A novel mutation in the TRIP11 gene: diagnostic approach from relatively common skeletal dysplasias to an extremely rare odontochondrodysplasia. J Clin Res Pediatr Endocrinol. 2022;14(4):475-80.
13. Stembalska A, Dudarewicz L, Śmigiel R. Lethal and life-limiting skeletal dysplasias: selected prenatal issues. Adv Clin Exp Med. 2021;30(6):641-7.
14. Huang Y, Liu C, Ding H, Wang Y, Yu L, Guo F, et al. Exome sequencing in fetuses with short long bones detected by ultrasonography: a retrospective cohort study. Front Genet. 2023;14:1032346.
15. Phadke SR, Puri RD, Ranganath P. Prenatal screening for genetic disorders: suggested guidelines for the Indian scenario. Indian J Med Res. 2017;146(6):689-99.